2020 New's Items

Programming PAM antennae for efficient CRISPR-Cas9 DNA editing

Wang F
Hao Y
Li Q
Li J
Zhang H
Zhang X
Wang L
Bustamante C
Fan C
2020

Bacterial CRISPR-Cas9 nucleases have been repurposed as powerful genome editing tools. Whereas engineering guide RNAs or Cas nucleases have proven to improve the efficiency of CRISPR editing, modulation of protospacer-adjacent motif (PAM), indispensable for CRISPR, has been less explored. Here, we develop a DNA origami–based platform to program a PAM antenna microenvironment and address its performance at the single-molecule level with submolecular resolution. To mimic spatially controlled in vivo PAM distribution as may occur in chromatin, we investigate the effect of PAM antennae...

Soliton-Dependent Electronic Transport across Bilayer Graphene Domain Wall

Jiang L
Wang S
Zhao S
Crommie MF
Wang F
2020

Layer-stacking domain wall in bilayer graphene is one type of topological defects that can greatly affect the electronic properties of bilayer graphene and therefore lead to nontrivial transport behaviors. An outstanding question on the layer stacking domain wall is how the electrons hop between two adjacent stacking domains. Here we report the first experimental observation of electronic transport across bilayer graphene domain walls by combining near-field infrared nanoscopy and scanning voltage microscopy techniques. We observe markedly different electron transport behaviors...

Critical properties of the ground-state localization-delocalization transition in the many-particle Aubry-André model

Cookmeyer T
Motruk J
Moore JE
2020

As opposed to random disorder, which localizes single-particle wave functions in one dimension (1D) at arbitrarily small disorder strengths, there is a localization-delocalization transition for quasiperiodic disorder in the 1D Aubry-André model at a finite disorder strength. On the single-particle level, many properties of the ground state at criticality have been revealed by applying a real-space renormalization-group scheme; the critical properties are determined solely by the continued-fraction expansion of the incommensurate frequency of the disorder. Here, we investigate the...

Interactions Remove the Quantization of the Chiral Photocurrent at Weyl Points

Avdoshkin A
Kozii VI
Moore JE
2020

The chiral photocurrent or circular photogalvanic effect (CPGE) is a photocurrent that depends on the sense of circular polarization. In a disorder-free, noninteracting chiral Weyl semimetal, the magnitude of the effect is approximately quantized with a material-independent quantum e3/h2 for reasons of band topology. We study...

Pore Chemistry of Metal–Organic Frameworks

Ji Z
Wang H
Canossa S
Wuttke S
Yaghi OM
2020

The pores in metal–organic frameworks (MOFs) can be functionalized by placing chemical entities along the backbone and within the backbone. This chemistry is enabled by the architectural, thermal, and chemical robustness of the frameworks and the ability to characterize them by many diffraction and spectroscopic techniques. The pore chemistry of MOFs is articulated in terms of site isolation, coupling, and cooperation and relate that to their functions in guest recognition, catalysis, ion and electron transport, energy transfer, pore-dynamic modulation, and interface construction. It...

Origins of the Pressure-Induced Phase Transition and Metallization in the Halide Perovskite (CH3NH3)PbI3

J.-H. Lee
A. Jaffe
Y. Lin
H. I. Karunadasa
J. B. Neaton
2020

Hybrid halide perovskites are promising for applications because of their favorable optoelectronic properties and low cost. Here we investigate the effects of hydrostatic pressure on the structural and electronic properties of (MA)PbI3 (MA = CH3NH3+) using first-principles density functional theory calculations. Our calculations predict that at a pressure of 0.23 GPa, the orthorhombic Fmmm phase becomes unstable with respect to a cubic Im3̅ phase, in good agreement...

Machine Learning for Materials Scientists: An Introductory Guide toward Best Practices

Wang AY-T
Murdock RJ
Kauwe SK
Oliynyk AO
Gurlo A
Brgoch J
Persson KA
Sparks TD
2020

This Methods/Protocols article is intended for materials scientists interested in performing machine learning-centered research. We cover broad guidelines and best practices regarding the obtaining and treatment of data, feature engineering, model training, validation, evaluation and comparison, popular repositories for materials data and benchmarking data sets, model and architecture sharing, and finally publication. In addition, we include interactive Jupyter notebooks with example Python code to demonstrate some of the concepts, workflows, and best practices discussed. Overall,...

Individually Encapsulated Frame-in-Frame Structure

Chen S
Liu X-Y
Jin J
Gao M
Chen C
Kong Q
Ji Z
Somorjai GA
Yaghi OM
Yang P
2020

A platinum-based nanoframe is a hollow frame with superior catalytic behavior, and a metal–organic framework (MOF) is another porous frame with multifunctionalities. Here, we present the combination of these two components into an individually encapsulated frame-in-frame structure. Via the surface functionalization with hexadecyltrimethylammonium bromide (CTAB) as the bridging layer, the Pt–Ni nanoframe is encased in a special MOF, zeolitic imidazolate framework-8 (ZIF-8), to achieve a single core–shell structure, as evidenced by the three-dimensional tomography. The growth...

Field-Dependent Ionic Conductivities from Generalized Fluctuation-Dissipation Relations

Lesnicki D
Gao CY
Rotenberg B
Limmer DT
2020

We derive a relationship for the electric field dependent ionic conductivity in terms of fluctuations of time integrated microscopic variables. We demonstrate this formalism with molecular dynamics simulations of solutions of differing ionic strength with implicit solvent conditions and molten salts. These calculations are aided by a novel nonequilibrium statistical reweighting scheme that allows for the conductivity to be computed as a continuous function of the applied field. In strong electrolytes, we find the fluctuations of the ionic current are Gaussian, and subsequently, the...

Chiral Spin Liquid Phase of the Triangular Lattice Hubbard Model: A Density Matrix Renormalization Group Study

Szasz A
Motruk J
Zaletel MP
Moore JE
2020

Motivated by experimental studies that have found signatures of a quantum spin liquid phase in organic crystals whose structure is well described by the two-dimensional triangular lattice, we study the Hubbard model on this lattice at half filling using the infinite-system density matrix renormalization group (iDMRG) method. On infinite cylinders with finite circumference, we identify an intermediate phase between observed metallic behavior at low interaction strength and Mott insulating spin-ordered behavior at strong interactions. Chiral ordering from spontaneous breaking of time-...